DEPRECATED: This Snakemake Language extension for VS Code has been moved to the official Snakemake channel and this version of the extension is now deprecated. The updated version can be found here: GitHub | Marketplace

Snakemake Language Support

Provides basic language support for Snakemake files (Snakefile, *.smk).

This is an unofficial extension and I am not affiliated with the Snakemake project, but since I use Snakemake daily (it is truly an excellent tool) I wanted better support for it in VSCode and in publishing this plugin I hope that others might get some value from it as well.

Feedback, suggestions, and contributions are very welcome!

Features

Syntax definitions based on Python, with added Snakemake keywords
Language rules based on Python
Snippets

Example

Snakemake syntax highlighting example

Example taken from Snakemake documentation.

Supported Syntax

Keywords and Functions

Configurations
- configfile
- include
- localrules
- onerror
- onstart
- onsuccess
- ruleorder
- snakefile
- workdir
Rules
- checkpoint
- rule
- subworkflow
Rule Parameters
- benchmark
- conda
- container
- cwl
- group
- input
- log
- message
- notebook
- output
- params
- priority
- resources
- run
- script
- shadow
- shell
- singularity
- threads
- version
- wildcard_constraints
- wrapper
Functions
- ancient
- directory
- expand
- pipe
- protected
- temp
- touch
- unpack

TODO

[ ] Indentation rules (really tricky for some reason)
[ ] Recognize string substitutions: "command {input}"
[ ] Recognize wildcard constraints inside string substitutions: "{sample,[A-Za-z0-9]+}"

Snakemake Language - DEPRECATED

alping

Snakemake Language Support

Features

Example

Supported Syntax

TODO

Snakemake Support for other Editors