Biocolor

Inline coloring for biological sequences. VS Code Extension.

• Auto-detect. Runs of nucleotide (≥12 nt, ≥90% NT alphabet) or amino-acid (≥12 aa, ≥90% AA alphabet, ≥8 distinct letters) get colored automatically.
• MSA conservation shading. Stacked rows are treated as an alignment; ≥3 rows trigger shading.
• FASTQ data. Four-line records are detected and colored. Quality line color gradient of Phred score. Hover on a quality character to see decoded value.
• <color>…</color> override. Force coloring of short or ambiguous fragments by wrapping them in tags.